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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute … system, reached  Emiley Eloe-Fadrosh , who heads the  Metagenome Program . “After discussing the project with him, I … because we have the resources as a user facility. The Metagenome Program team provided guidance and encouragement to …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… to contact? A:  Contacts are listed on the proposal call page. Feel free to  reach out to any of them with questions. … range from traditional single cell sequencing and mini-metagenomics to more targeted approaches, such as BioOrthogonal Non-Canonical Amino acid Tagging (BONCAT). Q:  Do you offer scholarships and/or …
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Single Cell Research Group
… genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., … Hungate1000 Collection.” Nat Biotechnol 36(4): 359-367 (2018). Woyke T ., Doud D. F. R., Schulz F. The trajectory of …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the … supported by NSF grants DEB-1441717, OCE-1335810, and OIA-1826734. …
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Exploring Phages at JGI
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Natural Prodcast Episode 3: The Primer, Part 3
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iPHoP: A Matchmaker for Phages and their Hosts
… these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … such as terrestrial soil, having additional isolates and metagenomic datasets will strengthen future virus-host …
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JGI@25: Roots of a Mutualist Relationship
… with poplar … Fungal Datasets … Genome Inside: THE Bioenergy Tree …
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Cracking the Secrets of the Diatom’s Shell
… biobased economy. They conduct research at the Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy Bioenergy Research Centers.  …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… of stable, synthetic microbial communities to take advantage of their joint metabolisms. Because, together, microbes …
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A Collaboration to Improve Plant Genome Annotations Across Species
… to include six more species, so in total, we are looking at 18 different species, which included over 2000 RNA Seq … community is of utmost importance. The scope of handling 18 different species is beyond the capacity of a single lab. … subscriber? Avinash: It has been publicly available since 2018. There were more than 15 citations even before this was …
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Matt Blow
… and plasticity in bacterial gene regulation. Nature methods 18 (12), 1499-1505 Shulse et al. 2019. Engineered Root … Phosphate from Phytate. Appl Environ Microbiol 85(18):e01210-19 Price et al 2018. Mutant phenotypes for thousands of bacterial genes of …
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