Results

Draft genome sequence of Pseudomonas extremaustralis strain USBA-GBX 515 isolated from Superparamo soil samples in Colombian Andes
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A … in large data sets, their work may be akin to finding a single snowflake on a colored-in page of that book. Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv University in …
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The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
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Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs
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ARBitrator: a software pipeline for on-demand retrieval of auto-curated nifH sequences from GenBank
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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions
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User Programs
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Danielle Goudeau
Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… and environmental challenges. Viruses are everywhere — in soil, the sea and, of course, the cells of other organisms. As they infect microbes like … genomes, JGI researcher Antonio Camargo developed a new pipeline for identifying viruses across many thousands of …
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MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.
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Diverse uncultivated ultra-small bacterial cells in groundwater
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