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Natural Prodcast Episode 2: The Primer, Part 2
… the sponges or other things. And we know lots more about microbiomes and symbionts that live with other organisms, … has been really crucial.  DAN: Yeah, yeah. The more data you generate, the more knowledge you can generate. So …
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Integrating Experimentation with Data
… Automated Laboratories: Integrating Experimentation with Data” was held at the Seattle Marriott Waterfront in Seattle, Washington.  Topics included:  Environmental Microbiomes Biodesign and Synthetic Biology AI/ML-enabled Laboratory Automation, Data Integration and Modeling This three-day joint meeting …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… him about more recent work like ActDES, which is a curated database of actinobacteria for evolutionary studies, and … often end up realizing that what is defined by the KEGG [database], for example, is not enough even there. So it’s … all, we were approaching it on the basis of the available data that is out there. So let’s think about the metabolomic …
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Virus species names have been standardized; virus names remain unchanged
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User Programs
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Plant Program
… understanding of plant diversity and integrating various data types to explore the molecular mechanisms behind … the Plant Program is advancing research into plant-microbiome interactions, focusing on how environmental … health. By integrating cutting-edge technologies and data-driven methods, the program equips researchers …
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Recruiting Human Microbiome Shotgun Data to Site-Specific Reference Genomes
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2024 Progress Report
… the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area … we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global … with more than 15,000 secondary users who made use of our data. We completed 39,870 projects in FY24 We generated 871 …
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VEGA Symposium
… of virus-host interactions and phage-based technologies for microbiome manipulation, the VEGA symposium represents a … Kathryn Kauffman, University at Buffalo Frederique Le Roux, Université de Montréal … Simon Roux Jonelle Basso Maureen Berg Emiley Eloe-Fadrosh … Jasmine Bunn , JGI Administrative Support …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Abdulqader Mentors: Andrei Steindorff, Robert Riley, Jasmyn Pangilinan, Kurt LaButti Project:  Prediction and Identification of Mitochondrial Plasmids from DNA Sequence Moitrish Majumdar Mentors: Bikash …
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Workforce Development & Education Outreach
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Statement on the Use of Genomics Data
… of genomics through open access to resources and promoting data sharing to accelerate discovery and maximize the … to engage the community to inform necessary changes to JGI data policies. Since completion of the HGP, the JGI has sustained its commitment to uploading sequence data generated on behalf of its user community to NCBI as …
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