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Polar Phytoplankton Need Zinc to Cope with the Cold
… bioenergy and biomanufacturing. The JGI Algal Program makes genomes and multi-omics data from JGI CSP projects publicly …
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Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes
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Mapping the Earth’s Hidden Fungal Kingdom
… one of the world's most comprehensive collections of fungal genomes. A sweeping analysis published in Nature Reviews Microbiology of nearly 2,000 of these genomes reveals just how much we still have to discover … generalist species from specialists based on their genetic signatures. The scale and quality of JGI data makes our user …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… willow and its close relative  Populus trichocarpa,  or the poplar tree, are potential biofuel feedstocks of interest to the U.S. Department of Energy (DOE). (Poplar is a Flagship Plant.) To engineer them, researchers … willow’s sex chromosomes, so the researchers investigated poplar for which genes might be shared in common between …
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Len Pennacchio
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Machine Learning Reveals Signatures of Promiscuous Microbial Amidases for Micropollutant Biotransformations
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Picking Up Threads of Cotton Genomics
… darwinii are the others. All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in size, and are hybrids comprised of cotton A and cotton D genomes. A multi-institutional team including researchers at … (Berkeley Lab) has now sequenced and assembled the genomes of these five cotton lineages. Senior authors of …
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Natural Prodcast Episode 19: Bill Fenical
… So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And … that we needed to ask whether they would do the full genomes for us. So fortunately, the secondary metabolite … be some real surprises. I mean, they’re probably smaller genomes. They’re gram-negative bacteria. But we want to see …
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Igor Grigoriev
… and led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the … Fungal Genomics program which resulted in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he launched … in Molecular Biology, Research Institute for Genetics and Selection of Industrial Organisms, Moscow, Russia …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, for … reactions. For this article alone, more than 600 genomes (dubbed “GEBA-Actino”) were sequenced from DSMZ … them are available on the JGI’s Integrated Microbial Genomes & Microbiomes ( IMG/M ) portal. As part of a …
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Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay
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Divergent selection and climate adaptation fuel genomic differentiation between sister species of Sphagnum (peat moss).
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