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JGIota: Looking Back at Sequencing for Soybeans
… The soybean is a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome …
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JGIota: Sequencing Shiitakes with David Hibbett
… David Hibbett of Clark University fills us in on the kind of decay that makes shiitake mushrooms special. This week, he …
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JGI@25: Strengthening Soybean
… of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our … impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program. … was just like rediscovering genetics, with the evolution of sequencing technologies and the evolution of …
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Examples: Successful LOIs & Submissions
… to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared with permission from the PIs who drafted them.  … Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic insights …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our … different areas, beyond the project’s initial scope. Sequencing and culturing this vast collection of rumen … rumen microbes are awesome and this is just another example why.” …
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Picking Up Threads of Cotton Genomics
… across global lineages . Come harvest time, the cotton fields look like popcorn is literally growing on plants, with … insights on crop improvements at a genetic level, including why having multiple copies of their genomes (polyploidy) is … their genomes were “remarkably” stable. “We thought we were sequencing the same genome multiple times,” Schmutz …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with …
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A More Intuitive Phytozome Interface
… the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become the current, and only, … Questions about the transition from Phytozome v12 to v13. Why is it necessary to retire Phytozome v12? The codebase …
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Understanding Wildfire Recovery, Starting in Soil
… look at the soil microbes present a year after a wildfire. The Science After a wildfire burns, recovery begins … which microbes in the soil persist after a wildfire — and why they thrive — gives forest managers more avenues to … a step further, using both DNA and messenger RNA (mRNA) sequencing to identify those traits that have helped fungi, …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings together established and emerging scientists from academia, industry, and …
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Sequencing the fungal tree of life
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Genome sequence of the palaeopolyploid soybean
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