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FICUS Overview
… for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily integrate … processes, making it difficult to propose projects that truly integrated the capabilities of more than one … sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the Department of Energy’s …
Learn more
Boosting Small Molecule Production in Super “Soup”
… engineered for the biochemical conversion of glucose to value-added products are limited in chemical output due … Austin and Michael Jewett of Northwestern University describe a two-pronged approach that starts with engineered yeast cells but then moves out … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… JGI will advance the bioeconomy, leveraging partnerships to advance foundational science, creating opportunities for … Advancing the bioeconomy will provide a wide range of benefits, but it also requires a deep understanding of … who work with the JGI through approved proposals; there’s a much larger community of people who use JGI-produced data …
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Secondary Metabolites Program
… for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in … products and bioenergy crop enhancement. The program aims to tap into the largely unexplored biochemical diversity within … bacteria, fungi, algae and plants. These compounds are key to organisms' interactions with their environments and with …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions are available) … JGI Metabolomics Program , along with Jenny Mortimer, Director of Plant Systems Biology at the Joint BioEnergy … are strongly sorbed to the clays. Sandy soils are much more likely to work well for metabolomics.  Q:  What …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted to expand its habitat range. … is a widespread, perennial grass in North America that has been the target of extensive natural sampling and field … novel combinations of genetic diversity. We also found that much of the variation in physical characteristics that is …
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A User-Centered Approach to Accessing JGI Data
… year, it was only accessible through the plant portal  Phytozome . Now the portal offers a way for users to more … create a common set of ‘baseline metadata’ across the files that are submitted by each scientific program,” he said. “If … JGI Data Policy considerations do users accessing need to be mindful of? A:  The JGI Data Portal currently only …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) has now … Program. He and Grimwood were also part of the JGI team that contributed to the multinational consortium of …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a tree falls … the world. These tools give researchers a way to access much more information about fungi in these environments. … User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total* … plan in response to the pandemic.   FY 2019 Number of Unique Users There were 1,933 unique* JGI users in … 250 5.99 13,770.22 2100 2208 105 * Number of hours a week that sequencing machines are available to produce data. FY …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses … the Program aims to unlock the fundamental principles that govern ecosystem processes. This research provides …
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New Research Sheds Light on Diversity in the Deep Sea
… vents are ocean-floor openings in the Earth’s crust that emit hot, mineral-rich water. These vents are too deep in the sea to get any sunlight, and yet they still … novel enzymes and other biomolecules that could potentially be applied to biotechnology and medicine. A more robust …
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