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JGI@25: Using Team Science to Build Communities Around Data
… help solve energy and environmental challenges. The 1KFG project represents affiliations at over 180 organizations in … (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have developed a genomic model to study drought tolerance in perennial grasses using … U.S. Department of Energy (DOE) supports research programs for developing methods for converting plant biomass into …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused … epilepsy and subsequently generated one of the first mouse models for this common neurological disorder. In 1999, he … Len Pennacchio is the JGI's Deputy of Genomic Technologies. oClick …
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User Support Analysis Group
… The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development … tools to identify virus sequences, the design of new experimental approaches to link viruses to their … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of … Borevitz) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance … community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released its newest 5-Year … along multiple avenues, including agriculture, climate modeling, novel bioproducts, and environmental …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… help solve energy and environmental challenges.   The Human Genome Project began in 1990 when the U.S. Department of Energy … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … kingdom, they are well-suited to train machine learning models that predict biological traits from DNA sequences. …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of Bacteria and Archaea (GEBA) initiative. “This project has helped to define the current shape of the … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, … adoption of Brachypodium distachyon as an experimental model for the grasses. In addition to this fundamental work, … techniques) and utilizing these resources to understand genome organization and regulation, abiotic stress …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple … lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader … mycorrhizal species. The 62 mycorrhizal species include 29 newly-sequenced mycorrhizal genomes. With so many fungal  …
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