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Enabling pan-repository reanalysis for big data science of public metabolomics data
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated … for members of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast … cytometry when using standard FISH probes, so the signal amplification provided by HCR-FISH is critical for …
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Cataloging the Microbes that Manage the Health of River Systems
… States. They also provided multiple access points to the information. The team harnessed a community-science program to … available, river-focused microbial resource that provides information at multiple scales from genes to the community … over 1,000 metagenomes and established standardized sequencing protocols so that researchers could compare …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my first publication and it feels so rewarding,” Wint said. For Axel …
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DNA Synthesis Program
… bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on … by synthesizing genes, pathways, and whole chromosomes for bioenergy and bioproduct applications. The program has … gene synthesis, combinatorial pathway design, and efforts to refactor entire chromosomes, such as a yeast …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … at Tel Aviv University in Israel, the National Center for Biotechnology Information, and the U.S. Department of … and viruses vastly outnumber the microbes. Advances in sequencing technologies and computational tools have …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Plant Program
… to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing … species and plant-microbe interactions, advancing efforts to create renewable energy sources and bolster … and ecological roles to foster sustainable solutions for energy, agriculture and the environment. At its core, …
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Viral Genomics Group
… metagenomics and metatranscriptomics provide invaluable information on virus diversity and activity in microbial … resources. The main focus of these resource development efforts currently include:  in silico host prediction for uncultivated phages improved annotation and functional …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and other researchers at … this phenotype.’”  Results from A “Massive Amount” of Sequencing  Seed dispersal is critical for plants in the … address some of the most pressing challenges of our time. For more information, please visit  …
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Natural Prodcast Episode 2: The Primer, Part 2
… so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this … it’s not always clear exactly how much the bacteria are controlling us there. There are more bacteria – usually in our … is similar to primary metabolism. So if you were, you know, sequencing an organism for the first time, and you’ve never …
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