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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my first publication and it feels so rewarding,” Wint said. For Axel …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … at Tel Aviv University in Israel, the National Center for Biotechnology Information, and the U.S. Department of … and viruses vastly outnumber the microbes. Advances in sequencing technologies and computational tools have …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and other researchers at … this phenotype.’”  Results from A “Massive Amount” of Sequencing  Seed dispersal is critical for plants in the …
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A Grass Model to Help Improve Giant Miscanthus
The Science A reference genome sequence and genomic toolkit for the perennial grass  Miscanthus sinensis has been … year (perenniality). The Impact Among the long-term aims for bioenergy feedstock crops are increasing their yields … such as poor soils and drought. The reference genome for  M. sinensis,  and the associated genomic tools, allows  …
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JGI Announces 2025 New Investigator Portfolio
Gilman, Louis Graf, Yuxi Guo, Shaomei He, Vayu Hill- Maini, Forrest Lefler, Pok Man (Bob) Leung and Huang Li; [middle] … , allows us to work and share our tools with a widening circle of researchers whose work aligns with DOE missions .  … such as metatranscriptomics and environmental DNA sequencing to explore microbial and plant interactions …
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Fishing for Novel Cellulose Degraders
The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed with feathers … cells into several small pools, followed by whole genome amplification and shotgun sequencing. The team first tested the approach on bacterial …
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Cataloging the Microbes that Manage the Health of River Systems
States. They also provided multiple access points to the information. The team harnessed a community-science program to … available, river-focused microbial resource that provides information at multiple scales from genes to the community … over 1,000 metagenomes and established standardized sequencing protocols so that researchers could compare …
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Plant-Microbial Interactions Group
… experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, please reach out to …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… not good at that, you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m … podcast. BETSY PARKINSON: Awesome. Thank you so much for having me. Really excited to be here. DAN: Happy to have … technology.] BETSY PARKINSON: OK. DNA affinity purification sequencing. And so the way this essentially works is you …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with names — …
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JGI announces second round of 2023 New Investigator awardees
JGI is eager to work and share our tools with a widening circle of researchers. That’s why twice each year we look for novel research projects — aligned with DOE missions and … find a list of the second round of researchers accepted for 2023. Proposals are accepted year-round; the next review …
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A Plant Root Atlas for Tracking Developmental Trajectories
… nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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