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Metabolomics
… at the JGI by identifying the actual molecules present in an environment that influence system behavior.  Through this identification, metabolomics enables functional genome annotation, improves understanding of the role small … Find more details on the instrumentation we use and our methodology for metabolite analyses.  …
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IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… the first time, a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But what trends … lysogeny, they can insinuate themselves inside the host’s genome, living quietly and replicating with their host …
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Numerous cultivated and uncultivated viruses encode ribosomal proteins
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Natural Prodcast Episode 19: Bill Fenical
… DAN UDWARY: Hey, everyone. I’ve got a great episode for you … I learned a lot so much history from this conversation about why the ocean was basically unexplored until the 70s, … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …
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Meta-virus resource (MetaVR): expanding the frontiers of viral diversity with 24 million uncultivated virus genomes
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Exploring and Thinking Critically about Scientific Problems with JGI Interns
… multiple programs had their own goals to achieve, they constantly collaborated with each other on new ways of presenting and researching science. …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a … data portal of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Lab). Using 5,000 images of crystalized samples cloned and synthesized by the JGI, scientists have begun the …
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Metabolomics Program
… in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … The Metabolomics Program is focused on understanding the critical roles of metabolites in living systems, … relate to DOE missions in the bioeconomy, sustainability, and environmental research. This program integrates …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging questions existing in biology. He holds joint … JGI's Deputy of Genomic Technologies. oClick to learn more about the offerings and capabilities we offer JGI users to …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene … she said. Listen to study co-author Dan Udwary talk about genome mining using the GEM catalog in  this episode … “Looking across the tree of life, it’s striking how many uncultivated lineages are only represented by MAGs,” he …
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Informatics Advisory Committee
… IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, guidance, and counsel on the effective management and strategic … objectives for the JGI’s data science, informatics and information technology (IT) activities and strategic plan. …
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