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The Big Deal About Short Plants
… Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our … Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic insights in lignin biosynthetic …
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing … An assay used for profiling transcription factor binding … increasing efficiency and scalability. Read more about DAP-seq in this science feature. …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive … – reach out to us. 3.  Q: Can you use NCBI taxonomy information to search your interactive tree? A: Sure, if you … While are still working on finalizing the tree and related publication the tree is still in development and not …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … steps outlined below. Click the drop-downs to learn more about each step in the process. If you have any questions, … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of …
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Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… produce antibiotics. Still, the team estimates that genomic information is only available for a fraction of extant … information as well as of important descriptive metadata about each strain. “This has been a very fruitful … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic diversity of cell types and … single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better … Plant microbiomes hold the amazing ability to influence plant … strains, whereby they can modulate host metabolism, gene expression and phenotype. We have recently identified …
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Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes
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Genome organization of the vg1 and nodal3 gene clusters in the allotetraploid frog Xenopus laevis
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  … National Lab. You can find links to transcripts, more information on this episode, and our other episodes at …
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Exploring and Thinking Critically about Scientific Problems with JGI Interns
… While summer interns at the JGI from multiple programs had their own goals to achieve, they constantly collaborated …
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