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Cataloging the Microbes that Manage the Health of River Systems
… team harnessed a community-science program to collect samples from across the country to standardize the process. They … Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing … sequencing data, along with geochemical and geospatial measurements collected at each sampling site, were compiled …
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MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.
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Phylogenetic proximity is a key driver of temporal succession of marine giant viruses in a five-year metagenomic time-series
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Changes to virus taxonomy, the international code of virus classification and nomenclature, and the ICTV statutes ratified by the International Committee on Taxonomy of Viruses (2025)
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Virus species names have been standardized; virus names remain unchanged
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Mining Metagenomes for Cas Proteins
… of Cas proteins that can target single-stranded DNA molecules broadens the range of applications for CRISPR-Cas … elements by incorporating short sequences from infecting viruses and phages. In the event of a new infection, the … Nanoarchaeota, and Nanohaloarchaea. This work represents an excellent showcase of the unique capabilities …
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Game On: High School Students Drive Everglades Metagenomics Study
… and had to adapt when they noticed while collecting the samples on canoes just how much change had occurred in this … environmental challenges for collecting these soil samples, the students made coring devices, then planned and … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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A User-Centered Approach to Accessing JGI Data
… to create a common set of ‘baseline metadata’ across the files that are submitted by each scientific program,” he said. … to be mindful of? A:  The JGI Data Portal currently only presents public data (both restricted and unrestricted). The … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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Towards a genome-based virus taxonomy
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Changes to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2024)
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Virus taxonomy proposal summaries: a searchable and citable resource to disseminate virus taxonomy advances
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iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology
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