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Natural Prodcast Episode 18: A CSP Primer
… round of episodes. If you stick around for the next few months, you’re going to hear my last interview with my … the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … sequence-based predictor of gene expression levels using machine learning tools. “This was very exciting to see how Rhondene …
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven … and span the full kingdom, they are well-suited to train machine learning models that predict biological traits from DNA … The work conducted by the U.S. Department of Energy Joint Genome …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new … appears to have a lot in common with a Rube Goldberg machine: surprising dependencies, intricate connections, and … parts are proteins — amino acid structures that harvest light, transport molecules and regulate reactions. …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of … column, from the warm, well-lit surface, to the blue-lit twilight zone, to the continuous pressure of the dark abyss, … This research was supported by grants from the Simons Foundation (#329108 and #721223 to EFD) and Gordon and …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The … microbes to adapt to changing environments. It also sheds light on why the rapid injection of mutations in a … The work conducted by the U.S. Department of Energy Joint Genome …
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Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance
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Impact of single-cell genomics and metagenomics on the emerging view of extremophile “microbial dark matter”
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Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor
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SPRUCE-ing Up Science
… Together, they worked to develop a tool that leveraged machine learning to help users determine which computer program … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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