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Leadership
… strategic planning, talent management, and convening of advisory committees to guide the direction of programs and initiatives to enhance the JGI’s preeminence as a national resource. Members report to the JGI Director. …
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Analyze Data
… The JGI is involved in efforts to integrate data in support of new research questions that span domains. We also work with our partners to build infrastructure in support of new analysis techniques.  … Chief Informatics Officer …
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Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… metabolites for multiple applications. The planet’s microbial diversity is immense, yet much of it remains … and the tools to compare them are available on the JGI’s Integrated Microbial Genomes & Microbiomes ( IMG/M ) portal. … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership … genome science capabilities to support BER's mission of achieving a predictive understanding of complex … that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, …
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IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program … the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the … of the genome analysis and Bioinformatics core at Integrated Genomics Inc. in Chicago, IL. He did his …
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User Programs
… accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The … break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified … to the cleanup by continuing to access the JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … and standardized structure of the dataset position it as a resource for AI-driven approaches to predicting fungal …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in … Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … group. It’s just a massive amount of sequencing.”  A Resource for Many Applications Kellogg noted that C4 crops …
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