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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… A special issue of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell … more than 10 papers, including two Nature Plants publications, in five years, have come out of the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied … The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome … viral chitosanases to others like it available in public databases. These viral chitosanases were distinct from …
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JGI Advisory Committee
… The JGI Advisory Committee (JAC) is convened by the JGI Director to provide guidance on … committees, such as the User Executive Committee, the DNA Synthesis Science User Advisory Committee, the Fungal …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 1
… Gary Trubl, a virologist at Lawrence Livermore National Laboratory, wants to understand how viruses impact the release of greenhouse gases from Arctic permafrost. But to see what they’re doing, he first needs their DNA.   …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI … genome science capabilities to support BER's mission of achieving a predictive understanding of complex … Metagenome, Metabolomics, Secondary Metabolites, and DNA Synthesis Science Programs and draw from the …
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Natural Prodcast Episode 14: Nigel Mouncey
… DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five … Episode Transcript … on this episode is Dr. Nigel Mouncey , JGI’s Director, and also lead of the JGI’s Secondary Metabolites Science …
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Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
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Rex Malmstrom
… Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI … pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the Stable … Ph.D. in Marine Biology/Biochemistry, University of Delaware BA in …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program generated many new …
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IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
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