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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and the tools to compare them are available on the JGI’s Integrated Microbial Genomes & Microbiomes ( IMG/M ) portal. … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … before you see toxin. And we have some preliminary data with other samples that we do see days to a week of a … the end of last year. Dan: So these are going to be seaweed metagenomes? You’re sequencing everything? Brad: Metagenomes …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field … of genomics through open access to resources and promoting data sharing to accelerate discovery and maximize the … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… researchers searching for sequences of RNA viruses in large data sets, their work may be akin to finding a single … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … available metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. …
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MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, … applied to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & … sequenced without pooling, which yields ~ 180 Gb of data per library. Q: How much DNA/coverage is required for …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support … Synthetic Biology Informatics Group : a team that develops data science tools for workflow management and novel automations for DNA design, assembly and analysis Overview of biodesign products The JGI Biodesign …
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A Community Resource for Secondary Metabolite Researchers
… more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The Impact Secondary metabolites … in developing a secondary metabolites portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system …
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The JGI Data Portal: Improving User Experience
… technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from … “For thousands of scientists around the world, the JGI Genome Portal is a critical resource — it provides access to … work on IMG and GOLD,” said Steve Wilson, head of the JGI’s Systems Engineering Group. “Our team’s ultimate goal is to …
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Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System
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Prokaryote Program User Advisory Committee
… management and strategic objectives of the microbial and metagenome programs and report back to them. The Committee is …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … to have an index. You have to have the computer-searching systems. So one of the enabling technologies we wanted to do … so everybody, readers of the library, can come to our databases and look for the specific information they are …
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