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… to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … applied to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & … A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) metagenomes can be included, which do …

… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … BGC Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …

… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and … the JGI’s 25th anniversary, the JGI mural references dozens of iconic JGI contributions to advancing the frontiers of …

… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … through computational approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  … Lead author David Paez-Espino  discussed an early version of the paper at the 2018 Viral EcoGenomics & …

… as the rhizosphere), researchers hope this massive and integrated data set will help identify how different elements of the ecosystem interact and respond to changes in the … — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic profiles — combined offers the global research …

… The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome … three domains of life.  Using the IMG suite, JGI retrieved 142 of the GH75 AMGs, which encode enzymes that break down … similarities with bacterial counterparts suggest the viral versions of the chitosanases originated in bacteria before …

… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … compound. By feeding a microbial community a modified version of a specific chemical, where ordinary Carbon-12 … for a SIP-focused workshop at the JGI in the fall of 2024. “ We wanted to get into the nitty gritty with the people …

… sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … data are accessible on JGI data portals including the Integrated Microbial Genomes & Microbiomes (IMG/M) system, … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …

… JGI Mission As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … in studies of complex biological and environmental systems. We optimize our service to the community through … insights to improve energy crops, enhance biomass conversion efficiency, and discover microbial pathways for …

… The JGI is involved in efforts to integrate data in support of new research questions that span domains. We also work … with our partners to build infrastructure in support of new analysis techniques.  Notice Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any inconvenience. …