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A User-Centered Approach to Accessing JGI Data
… it was only accessible through the plant portal  Phytozome . Now the portal offers a way for users to more easily … through a kingdom portal (assemblies + annotations) For IMG & Mycocosm: Data that is associated with an ITS project … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
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IMG/M: integrated genome and metagenome comparative data analysis system
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” … Pacific Ocean, or in the bay, and be able to do chemical analysis, as well as transcript analysis. And what we’re … before you see toxin. And we have some preliminary data with other samples that we do see days to a week of a …
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JGI Advisory Committee
… The JGI Advisory Committee (JAC) is convened by the JGI Director to … Institute’s strategic, scientific, technical, informatics, management, and operational objectives. Serving as JGI’s …
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MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  Metagenome Stability … within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help inform … Neighbor (KNN) Classification. LDA is a supervised data compression technique that was used to take the …
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Genomes OnLine database (GOLD) v.7: updates and new features
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Genomes OnLine Database (GOLD) v.10: new features and updates
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Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community … Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities … engineering to drought stress resilience: RNA-seq and metabolomic insights in lignin biosynthetic pathway edited …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available … over 26,000 publicly available metagenomes in the JGI's IMG portal for mitochondrial ribosomal RNA sequences. The … The work conducted by the U.S. Department of Energy Joint Genome Institute …
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