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Methyl-Based Methanogenesis: an Ecological and Genomic Review
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and … on genome editing has focused on the seminal CRISPR-Cas9 system, which targets double-stranded DNA. The discovery of … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an … Berkeley National Laboratory (Berkeley Lab), and the DOE Systems Biology Knowledgebase (KBase). They also built an … from the literature. They then used the JGI’s GOLD and IMG data portals to get information about the genomes and …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida high school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, … through JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) system, reached  Emiley Eloe-Fadrosh , who heads the  …
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity … on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) database. In their analysis, the team found that … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… DAN: All right. Welcome back to Natural Prodcast. I did it. … mostly you. Anyway…I’m really happy today to be handing over our interview with Dr Elizabeth (or Betsy) Parkinson from … can turn on the natural product, say clusters or expression systems so that-- BETSY PARKINSON: Exactly. DAN: --you get …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … to establish with our stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in … The UEC represents the JGI user community and is responsible for providing input and …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies … within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help inform scientists and researchers more about the patterns and functions of environmental …
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Tour the IGB
… Take a virtual tour of the IGB, home of the DOE Joint Genome … 4th Floors The JGI mural on the 3rd floor whimsically references dozens of iconic JGI contributions to advancing the frontiers of environmental and energy genomics.  For more information about the science depicted, click here …
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The Joint Genome Institute's synthetic biology internal review process
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers could open avenues for using bacteria to produce ethylene and more.  Microbes … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused … DOE Joint Genome Institute, Senior Scientist at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. … his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a …
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