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Biotech Partners Summer Intern Co-Authors NAR Paper
… juniors who participated in internships at the DOE Joint Genome Institute this summer through the Biotech Partners … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this human … metabolite because it’s something that we have. There are animals that are known to be sources of secondary metabolites, …
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Game On: High School Students Drive Everglades Metagenomics Study
… course had a defined set of objectives, and started with an image of a spoonful of dirt with the question: Do you want … email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy (DOE) … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters … Research and Analysis ( CAMERA ). … Education … Selected Publications … Awards and Service …
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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities …
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Genome assembly and annotation of microalga Nannochloropsis oceanica C018.
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida … high school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators … cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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IMG 4 version of the integrated microbial genomes comparative analysis system
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IMG: the integrated microbial genomes database and comparative analysis system
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Cataloging the Microbes that Manage the Health of River Systems
Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing protocols so … collected at each sampling site, were compiled into the Genome Resolved Open Watershed database (GROWdb). The team …
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JGI@25: Strengthening Soybean
… and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … the first legume species with a published complete draft genome sequence. At the time, the vital global source of … is maintained alive. Once a crop is infected, ASR can decimate up to 60-90% of its yield.  (Learn more about the …
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A Grass Model to Help Improve Giant Miscanthus
… of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass  … Miscanthus sinensis has been published. Analysis of the genome sequence also provides insights into how the multiple … stressors such as drought and temperatures. Summary Images of giant miscanthus often appear in discussions of …
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