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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex … . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many … and their complex genomes are more difficult to sequence and assemble, in turn limiting the use of modern, …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in … Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and released a …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER … is discoverable and accessible. Linking the resources of powerful institutions like the JGI, KBase, NCBI, NMDC, … access to diverse datasets that deepen our understanding of how organisms interact with each other and with their …
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Mapping the Earth’s Hidden Fungal Kingdom
… about 200,000 fungal species have been named. Among those sequenced, roughly half of all genes have completely unknown … Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations …
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John Vogel
… years where he was a driving force behind the development of numerous genomic resources that fostered the widespread … on developing plant functional genomic resources (e.g. sequenced mutant collections, transformation technology, … techniques) and utilizing these resources to understand genome organization and regulation, abiotic stress …
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Natural Prodcast Episode 15: Katherine Duncan
… was really before– or kind of around about when the first genome sequencing was done. But natural products– marine … of almost finished characterizing them. We’ve got genome sequences, which are just incredible. We’ve looked at the … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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User Executive Committee Charter
… users and their science including technical capabilities offered, proposal review procedures, and the annual user … recommendations to the JGI regarding technical capabilities offered, including areas where more or less capacity is … annual JGI User Meeting, as well as input on other aspects of the meeting such as duration, location, and cost; …
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A roadmap for equitable reuse of public microbiome data
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Jane Grimwood Named HudsonAlpha Genomics Chair
… City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 Nature paper announcing a high-quality reference sequence of the complex switchgrass genome , using samples …
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Natural Prodcast Episode 17: Cassandra Quave
… culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of …
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