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A compendium of bacterial and archaeal single-cell amplified genomes from oxygen deficient marine waters
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The dynamic genome of Hydra
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Diversity, taxonomy, and evolution of archaeal viruses of the class Caudoviricetes
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Community Science Program
… The Community Science Program (CSP) provides the scientific community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of … Areas . Through this program, the DOE aims to advance genome science-based scientific research from a broad range …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… first time, a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, … lysogeny, they can insinuate themselves inside the host’s genome, living quietly and replicating with their host … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Scientists have discovered that the candidate bioenergy feedstock … led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. … var. filipes (94.8% complete) and resequenced a host of natural collections from across the species range. With … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress …
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A Community Resource for Secondary Metabolite Researchers
… Collaboratory encourages user engagement. The Science In addition to the core set of "primary … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The Impact Secondary metabolites …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of … can take advantage of existing methodologies developed for natural languages to study genomes,” Wang explained.  And … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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Lytic archaeal viruses infect abundant primary producers in Earth’s crust
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