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Frequently Asked Questions: Project Management
Christa Pennacchio   … You can visit the Products & Offerings section of our website for more details, including … by your project manager in the initial correspondence with you if the User Agreement and Appendix are active and … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Data Ecosystem
… as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and …
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific … community as a user facility pioneering functional genomics to solve the most relevant bioenergy and … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science … submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared with permission from the PIs who drafted them.  … …
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Operating Expenses
FY2023 Spending Profile The JGI is funded primarily by the DOE Office of Biological and Environmental Research (BER), a program within the DOE Office of Science. …
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and … perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis … Department of Energy (DOE) Bioenergy Research Center, along with researchers from the Energy Biosciences Institute, the …
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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Expanding genomics of mycorrhizal symbiosis
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Synthesis
… automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables users to validate hypotheses generated from mining genomic data by designing and assembling physical DNA … CRISPR gRNA design tool  … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, …
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RNA-Seq Reveals that Light and Darkness Are Different Stimuli in Freshwater Heterotrophic Actinobacteria
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