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Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, … with the ultimate objective of facilitating omics-based scientific investigations. Development and maintenance … fraction, AF) have been computed for nearly 28,000 bacterial and archaeal genomes. By clustering genomes based …
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Targeted diversity generation by intraterrestrial archaea and archaeal viruses
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
In   April 2020, we mark both the 50th celebration of Earth … in one of those counties. The shelter-in-place order has since been extended statewide. In this brief captioned … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate … what escapes to the atmosphere in the form of greenhouse gases (e.g., carbon dioxide, methane, and nitrous oxide). …
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New Research Sheds Light on Diversity in the Deep Sea
Microbial communities living near hydrothermal deep-sea vents hold vast potential for bioenergy.   The Science Hydrothermal … and repair themselves or eliminate waste. The Impact The bacteria, archaea and other microorganisms of the microbial …
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A genomic catalog of Earth’s microbiomes
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  Nature …
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Lytic archaeal viruses infect abundant primary producers in Earth’s crust
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A cryptic third active site in cyanophycin synthetase creates primers for polymerization
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2025 NeLLi Symposium
Registration and Agenda Coming Soon!  Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the 2025 NeLLi … recommendations for cultivating new Bacteria and Archaea revealed by a recent genome census . Speakers John M. …
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Natural Prodcast Episode 18: A CSP Primer
… … DAN UDWARY: It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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