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Protist impacts on marine cyanovirocell metabolism
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida high school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer … sent through JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) system, reached  Emiley Eloe-Fadrosh , …
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An Integrated Dataset to Understand Ecosystem Interaction
… data set will help identify how different elements of the ecosystem interact and respond to changes in the environment. The Impact Dubbed “the” bioenergy tree, poplars are known for … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of …
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Natural Prodcast Episode 16: Marcy Balunas
… … DAN: Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it going?  DAN: Good. … know that that’s ever necessarily like a good description of anyone because chemistry means a lot, especially when … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much …
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A Plant Root Atlas for Tracking Developmental Trajectories
… collaboratively developed for this purpose by the JGI plant comparative genomics data portal  Phytozome and will be … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root atlas reveals developmental trajectories in wild type and cell …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … help determine if these fungi act as friends or foes. The Impact Microbial communities comprised of fungi and bacteria … of the key community participants and enabling future metagenomics studies.   … The sequencing project was funded …
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Impact of Harvest on Switchgrass Leaf Microbial Communities
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Major impacts of widespread structural variation on sorghum.
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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David Goodstein
… focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative genomic systems as the JGI’s eukaryote research … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a … sojae, which imperils soybean harvests. The subsequent comparative analysis of these two pathogens, led by the JGI … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
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