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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … breadth. Across this set, the same 15 core genes — 14 encoding energy-production proteins plus one ribosomal … Information's GenBank. This led to identifying 6,467 of those assemblies, or roughly 70%, to contain …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … mechanistic enzymology to natural product biosynthesis to genomics to directed evolution– but it’s just the– it really … that if you looked at the grant applications for the last 40 years for studying biosynthetic pathways, all of them …
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there and welcome back for Episode 8 of Natural Prodcast. This week, we have our conversation …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … of microbial origin is around 30,000 from fungal, and a 40,000 from bacteria. Okay? And among the 40,000 from …
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Products
… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and deliverables as well as target cycle … shotgun sequencing Assembly, annotation ( Mycocosm ) 256/404 Fungal Standard Draft Whole genome shotgun sequencing …
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What Happens Underground Influences Global Nutrient Cycles
… fluctuating environmental conditions. The team aims to functionally link gene families to photosynthesis and … experiment in the Sierra Nevada mountain range since 2014 to learn more about the microbial responses and feedbacks … omics and computational resources with JGI’s cutting-edge genomics, DNA synthesis and complementary capabilities. …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
…   The Science Scientists have fully decoded the genome of an oil-producing green alga, and demonstrated precise … gene targeting in the genome in the November 2025 issue of The Plant Cell. Auxenochlorella is an allodiploid hybrid … with only 7,500 genes, compared to 17,000 in the model alga Chlamydomonas . The genome is also compact at 22 megabases …
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Len Pennacchio
… Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … Scientist at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … them. Despite advances in the years since this landmark publication, SOD continued to sweep through dozens of …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … as many as it did and how that became sort of a trend in genomics. So anyway, yeah, JGI has been working in secondary … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … marine natural products. And was at the university for over 40 years. There were four of us as kids in the family. I was … the mid-late ’80s. And at that time, you know, it’s before genomics existed. This is before we’re even thinking of …
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