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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … step for many projects at the JGI. The quality of the starting material is one of the greatest predictors …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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A roadmap for equitable reuse of public microbiome data
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A bacterial toolkit for plants
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Biochemical characterization of Fsa16295Glu from “Fervidibacter sacchari,” the first hyperthermophilic GH50 with β-1,3-endoglucanase activity and founding member of the subfamily GH50_3
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside … structures within cells. This is the largest dataset of its kind ever assembled. The team identified 15 core …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different light cues by altering their … to their biotic environment using emerging single-cell characterization technologies (scRNA-seq, Spatial …
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Multisubstrate specificity shaped the complex evolution of the aminotransferase family across the tree of life.
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How Microbes Can Protect Plants in Drier Straits
… A mini-episode looking at the efforts of Pankaj Trivedi, whose New Investigator proposal was … Science Program, to use microbiome science to help make plants more resilient to drought. …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi, again. This is Dan, and … and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, archaea, they all have …
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Community Science Program
… synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the … genome science-based scientific research from a broad range of disciplines. Three calls fall under the umbrella of our … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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Plant Pan-Genomics Comes of Age
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