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Understanding Wildfire Recovery, Starting in Soil
… forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees to grow. However, fire changes the microbes within the soil. To get a … extreme wildfires, more and more forests are under threat. Understanding which microbes in the soil persist after a …
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include the following items: … How To Create an Annotated GenBank File There are several easy-to-use open source tools for converting DNA sequence files into … How To Use ApE To save your ApE file as a Genbank file, …
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CalTeach
… for undergraduate majors interested in developing a deep understanding of STEM teaching & learning. Their coursework focuses on STEM pedagogy, educational theory and …   Internship Snapshots   …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is … automations for DNA design, assembly and analysis Overview of biodesign products The JGI Biodesign platform enables …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of …   Learn more about our individual calls and other opportunities to work with …
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The Impact of Genome Analyses on Our Understanding of Ammonia-Oxidizing Bacteria*
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Microbiome Data Science: Understanding Our Microbial Planet
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta Gribaldo of the … “Therefore, determining under which form it emerged and how it gave rise to the different pathways we see today is …
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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … chemicals. Summary Filamentous fungi are like handymen who show up at a job site for a task that requires a flathead … importantly, when faced with a veritable buffet of carbon sources, these fungi detect which complex chains are …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… early Earth conditions. The Science Through a combination of sequencing tools and techniques applied to samples … is thought to have played a key role in the development of life on Earth; the iron-oxide microbial mats at Yellowstone … in these microbial mats provides the team with clues on how early life evolved on Earth as iron is believed to have …
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An Integrated Dataset to Understand Ecosystem Interaction
… microbial partners. The Science To help better understand how ecosystems work and how healthy they are, a recent data … trees. The data set generated is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization … will be able to conduct a wide variety of analyses that can enhance our understanding of plant-microbe interactions — …
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Filling in the Plant Tree of Life
… What if we understood plants and how they adapt to their ever-changing environments better? … crops. But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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