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BBMerge – Accurate paired shotgun read merging via overlap
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Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … And then genomics happened. Dan: Yeah, I did my first genome sequence with you. Brad: That’s right,  Dan: JGI did … Patrick would spend time between our two laboratories doing metagenomics, some genomics. We were a little concerned …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… is organized by the EcoFAB Steering Committee, dedicated to advancing standardized fabricated ecosystems for microbiome …
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Emiley Eloe-Fadrosh
… to pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging … training in human microbiome research at the Institute for Genome Sciences at the University of Maryland School of … Institution of Oceanography. She stepped into the Metagenome Program Lead position in 2017. She also leads the …
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Cataloging the Microbes that Manage the Health of River Systems
… Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing protocols so … at each sampling site, were compiled into the Genome Resolved Open Watershed database (GROWdb). The team also …
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Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for … most species do not grow easily in the lab. To access the genomes of uncultured  microbes , scientists usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies … changes. Summary Researchers have been utilizing metagenomics as a way to study a collection of … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of …
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DAP-seq Drives Robust Mapping of Gene Regulation
… to technical limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification … finally coming into clear view. Behind the Breakthroughs: Advancing gene regulation mapping Previous methods to … allowed researchers to map regulatory “switches” in species beyond traditional models. Updates to DAP-seq build upon the …
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Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the … for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar …
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