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A roadmap for equitable reuse of public microbiome data
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A bacterial pioneer produces cellulase complexes that persist through community succession
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Scientists have discovered that the candidate bioenergy feedstock … of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of … of switchgrass and is a key component in providing genetic variation available for selection to improve biofuel …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics … approaches including amplicon and metagenomic sequencing. For example, they showed that the composition of the … was then used to produce a paired amplicon dataset (a.k.a. 16S rRNA gene sequencing), a shotgun metagenome, and a …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … energy and environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive … 1.  Q(uestion): Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our … While are still working on finalizing the tree and related publication the tree is still in development and not …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint … so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this … that produces those. So it’s not a hard and fast rule, but, generally, animals do not have secondary metabolism that we …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a … Their partnership is widespread and cosmopolitan: more than 20,000 ascomycete species and hundreds of microalgae are … and the microalga,  Asterochloris glomerata . To see how gene expression changes when living together versus apart, …
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Green Algae Reveal One mRNA Encodes Many Proteins
… Gene expression in eukaryotes was long held to be monocistronic – that is, a single gene … research team included scientists at the University of California (UC), Berkeley, UCLA, UC Davis, Brookhaven National … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to … Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared … Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic insights in lignin biosynthetic …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users … biology. The collaborations present exciting possibilities for scientific exploration, granting access to diverse … Through its partnership with NERSC and the DOE Energy Sciences Network …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to … into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes for bioenergy, … Check out our organism-agnostic CRISPR gRNA design tool  …
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