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BGC Atlas: a web resource for exploring the global chemical diversity encoded in bacterial genomes
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Comparison of soil biosolarization with mesophilic and thermophilic solid digestates on soil microbial quantity and diversity
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to … fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao …
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ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The … so many fungal  genomes , the team conducted a large-scale comparison, charting several changes caused by the lifestyle … The project was funded by the U.S. Department of Energy Joint Genome …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, … through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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Taxonomic and functional restoration of tallgrass prairie soil microbial communities in comparison to remnant and agricultural soils
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Comparison between Ribosomal Assembly and Machine Learning Tools for Microbial Identification of Organisms with Different Characteristics
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users … Through its partnership with NERSC and the DOE Energy Sciences Network … to facilitate these efforts. Particular areas of emphasis will be the development of tools and …
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Soil metabolomics: Deciphering underground metabolic webs in terrestrial ecosystems
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Trends in Prokaryotic Evolution Revealed by Comparison of Closely Related Bacterial and Archaeal Genomes ▿
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