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Tanja Woyke
… primary interest and passion. Dr. Woyke stepped into the Microbial Genomics Program Lead position in 2009 and assumed … Member for Lake Arrowhead Microbial Genomics Conference (2017-current) Genomic Standards Consortium Advisory Board … Editorial Board Member for ISME J (Senior Editor 2016-2021), Peer J (2015-2019), Scientific Data (2017-2019). …
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Data Policy
… : A period in which data is not publicly available in JGI systems or outside repositories. Full access is granted to … in which data is publicly visible and available in JGI systems. Users not involved with the proposal under which … and embargo policies. Use-restricted data: In past data policies, data were publicly visible in JGI …
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Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation
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Emiley Eloe-Fadrosh
… joined the JGI in 2014 to pursue her research interests in microbial ecology and metagenomics. Her current research … She stepped into the Metagenome Program Lead position in 2017. She also leads the DOE’s multi-lab National Microbiome … analysis strategy for stable isotope probing metagenomics. mSystems . 8(4):e0128022. Kelliher JM, et al. 2023. …
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Microbiome composition modulates secondary metabolism in a multispecies bacterial community
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The secondary metabolism collaboratory: a database and web discussion portal for secondary metabolite biosynthetic gene clusters
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Axel Visel
Dr. Visel also served as JGI Interim Director from March 2016 – March 2017.   … Axel Visel is the JGI's Deputy for Science … a regulator of lipid metabolism in microalgae .  Nature Plants 1: 15107 Lupiáñez DG, Kraft K, Heinrich V, Krawitz P, …
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Jeremy Schmutz
… from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community … hallii . Nature Communications 9: 5213. Huang, P et al. 2017. Sparse panicle1 is required for inflorescence …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… help solve energy and environmental challenges.   Usually, plants have the upper hand against any kind of biomass … said as she opened her talk at the  2022 JGI Annual Meeting . In an herbivore’s poop sample, there’s a whole … kinds of supplies in the quest to break down plants.  In 2016, her team leveraged transcriptomics and other assays to …
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JGI@25: Using Team Science to Build Communities Around Data
… for fungal metagenomics. Two more CSP proposals came in 2016 that would complement these initial efforts: Spatafora … along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is to generate … representing all major evolutionary lineages in the land plant tree of life.   As of the start of 2022, there were …
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JGI@25: From Life at the Extremes to Editing Genomes
… seeks other enzymes in the CRISPR-Cas system. For the past few years they have partnered with JGI’s Microbiome … Science group led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense … Cas9 with increased lifetime in human plasma. Nat Commun. 2017 Nov 10;8(1):1424. doi: 10.1038/s41467-017-01408-4. …
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When “The Blob” Made It Hotter Under the Water
… event may foreshadow climate change impact on marine microbial communities. The Science A team of researchers … of how marine microbial communities are affected by warming events. More time-series studies could help researchers … go from coastal to open ocean waters. Between 2010 and 2016, Hallam and his colleagues collected more than 270 …
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