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Nikos Kyrpides
… at Integrated Genomics Inc. in Chicago, IL. He did his postdoctoral studies with Carl Woese at the University of … through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification of mobile genetic … Reveal Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson …
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Simon Roux
… for metagenome-derived viruses of archaea and bacteria. PLoS Biology 21, e3002083 Roux et al., 2021. Ecology and … in the global microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information about an …
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Natural Prodcast Episode 2: The Primer, Part 2
… the 50s into the 60s, there was a huge growth – a huge explosion in new molecules discovered. This is a time when all …
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Refining the Process of Identifying Algae Biotechnology Candidates
… was sequenced and assembled at the JGI. Sara Calhoun in Igor Grigoriev’s team at the JGI led the multi-omics analysis … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. …
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JGI Scientists Pen Genome Watch Articles
… and what we’re learning about their metabolism . And postdoctoral researcher Sara Calhoun, data scientist Stephen Mondo, and  Fungal and Algal program lead Igor Grigoriev took readers on a quick romp through the  …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
Graduate Interns Tahirah Williams and mentors Igor Grigoriev and Bishoy Kamel, A Comparative Analysis of … and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for …
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Natural Prodcast Episode 18: A CSP Primer
… is over, the data gets released on our portals, such as IMGM. But we also then push the data to GenBank. So the raw …
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iPHoP: A Matchmaker for Phages and their Hosts
… prediction methods. In building this program,  described in Plos Biology , the research team led by scientists at the … Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program generated many new … Program awarded under UC-DOE Prime Contract DE-AC02-05CH11231. The work conducted by the U.S. Department of Energy …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
Completed VFP applications are due on January 12, 2022. Faculty interested in developing proposals with …
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Plant-Microbial Interactions Group
… world. Research Team    … Plant microbiomes hold the amazing ability to influence plant development, fitness and … 10.1038/s41477-024-01666-3 10.1016/j.celrep.2023.112676 10.1016/j.devcel.2022.01.008 …
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Natural Prodcast Episode 5: Brad Moore
Diego. San Diego, of course, is the “home turf” of my post-doctoral mentor, Brad Moore, who has joint appointments at UC … known each other for quite a while because Brad was my postdoctoral advisor.  Brad: Oh my goodness. Those were good …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… largest JGI-sequenced fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  … Science Program proposal that Martin submitted in 2012. At that time, the field had surveyed many different soil … at the Walnut Creek Marriott the week of September 30 – October 4, 2024.  … The U.S. Department of Energy Joint …
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