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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have … Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources from laboratories around the … collection to identify microbial markers that would allow farmers to screen livestock, and breed low-methane producing …
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Supporting Global Research into Actinomycetes
… word. The 500 species described within the group are responsible for roughly two-thirds of antibiotics, and a deeper … are also abundant in soil and can be used as biocontrol agents and to promote plant growth. It is the largest … community to discuss those data and make publicly-visible comments. Its purpose is to facilitate open scientific …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the natural … challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to environmental changes. The program lays the groundwork for …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” a … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact …
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Tracing the Evolution of Shiitake Mushrooms
… genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new analysis … diversity between cultivated and wild shiitake populations. The Impact Lentinula mushrooms are white rot fungi, … project of the Spanish Ministry of Science and Innovation (cofinanced by FEDER funds) to F.J.R.-D., S.C., and …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have … food in Central America and Eastern Africa. For smallholder farmers — those with less than two hectares of land — common … well as a vital economic player, as a cash crop for small farmers and a commercial crop for large producers. The team …
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project …
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Webinar: PhycoCosm Tutorial
… about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever … the resources for free. 8.  Q: What makes a successful project? A: Combination of: DOE mission relevance Science …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm … Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other … on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled a mycobiome culture …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… Gardeners and farmers around the country recognize that crop varieties grow best in certain regions. Most plant species have adapted to their local … fellow in the Juenger lab and continues to work on the project from a lab at Michigan State University that is …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to … artificial intelligence to aspects of research questions Another intern summer has closed at the U.S. Department …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the Environmental Molecular Sciences Laboratory hosted a webinar to … from the JGI and EMSL in one proposed research project. In the same proposal, researchers can also request … Q(uestion) 1: Can researchers perform suggested treatments in the …
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