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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… mechanisms of pathogenesis . Science. 2006 Sep 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. Genetics. Genomes highlight …
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Simon Roux
… include the development of novel computational tools to identify virus sequences, the design of new experimental … ecogenomics. For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and … in the global microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information about an …
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Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
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Products
… an extensive internal product audit to analyze the scientific value, demand, and costs of current offerings in the … vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs 5-10kb in size Single gene … transcriptome or de novo assembly), DGE, alignment files 91/126 Metabolomics Polar metabolite analysis Relative …
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Microbiome Data Science Team
… processing and visualization of “big data,” and artificial Intelligent/machine learning approaches in data … of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of … Reveal Thousands of Small, Novel Genes. Cell 178(5):1245-1259 Nayfach S, et al, (2019) New insights from …
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Natural Prodcast Episode 9: Roger Linington
… those two groups and the ways in which they approached scientific problems. And so that sort of opened my eyes to the … about the topic we cared about. And that gave us about 12,000 molecules. And that was enough for us to build a … accurate. And so we told people that if they would curate 1000 entries, that that would earn them authorship of the …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… a bit embarrassed that we recorded this conversation about 10 months ago. I was pretty green at the time and had some … a very unique on one compound. So cahuitamycin is an antifungal that will actually protect the fungal farms from … to my daughters– what did they think would be important in 100 years. Would natural products be important for …
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A Collaboration to Improve Plant Genome Annotations Across Species
… targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, … plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to … Avinash: In the initial planning phase, there were about 10 groups that came together to standardize the experimental …
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Marine Microbe Contains Multitudes
… and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long Hawaii … they have used the sequence of a “marker gene,” namely the 16S ribosomal RNA (rRNA) gene, to mark or identify microbial species. All SAR324 have very closely related …
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Atif Shahab
… Since 2012, Mr. Shahab has led the development of an integrated …
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JGI announces first round of 2023 New Investigator awardees
… Community Science Program.  Below find a list of the first 10 researchers accepted for 2023. Proposals are accepted … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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John Vogel
… he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development … Brachypodium. Genetics, 223 (2), art. no. iyac146 DOI: 10.1093/genetics/iyac146 Gordon, et. al. 2020 Gradual … and metabolic responses. Proc. Natl. Acad. Sci. 116 (52) 27124-27132 Sasse, et. al.J. 2019 Multilab EcoFAB study shows …
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