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Streamlining Regulon Identification in Bacteria
… sequencing, they were able to identify the target genes of 11 sigma factors in Streptomyces coelicolor . The Impact As … and were able to identify the associated target genes in 11 of those. That work published in Nature Communications on … addressed in the study were found to control more than 100 genes, one of which was directly characterized by …
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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from … Malmstrom, Nandita Nath & W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… in these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on … combined with nearly 5,000 publicly available ones and 1,100 metagenome-assembled genomes (MAGs) reconstructed from …
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Toward More Efficient Artificial Photosynthesis
Office of Science User Facility (contract no. DE-AC02-05CH11231) with T.J.E. as grantee. J.-C.B. acknowledges the … of Bordeaux Initiative of Excellence (IDEX Bordeaux; (ANR)-10-IDEX-03-02). T.E.M. and R.M. were supported by the …
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Finding the Fermenters
… more than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible … National Institute of Food and Agriculture grant 1019985, and the University of California, Davis Small Grant … genome on KBase … Narrative for Porphyromonadaceae sp. W3.11 genome on KBase … The phenotype and genotype of …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
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Jeremy Schmutz
… co-led the team that finished the DOE human chromosomes 5, 16, and 19. Following the completion of the human genome … genome architecture of sugarcane. Nature 628, 804–810. Sreedasyam, A., Plott, C., MdS Hossain, J. T., Lovell, … agronomically valuable loci. Nature Biotechnology 38:1203-1210. Chen, ZJ et al. 2020. Genomic diversifications of five …
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Katherine Louie
… analysis, creation of large metabolite databases by running 1000s of metabolite standards, and development of … of natural products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, … Molecular Sciences and Chemical Engineering.  DOI: 10.1016/b978-0-12-409547-2.14834-6 4. Roth MS, Gallaher SD, …
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Marine Microbe Contains Multitudes
… and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long Hawaii … was supported by grants from the Simons Foundation (#329108 and #721223 to EFD) and Gordon and Betty Moore … Facility, is supported under contract number DE-AC02-05CH11231. This work is a contribution of the Simons …
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JGI Interns at UC Merced Earn CAMP Merit Awards
… technology, engineering and math (STEM) fields. At the 2016 CAMP Statewide Undergraduate Research Symposium , held … the 99 students who attended, representing 9 UC campuses, 10 special merit posters/presenters and 10 honorable mentions were recognized. The 5 UC Merced …
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A Collaboration to Improve Plant Genome Annotations Across Species
… targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, … Avinash: In the initial planning phase, there were about 10 groups that came together to standardize the experimental … additional biological information. As I’ve said earlier, 16 to 56 percent of plant genes are poorly characterized. So …
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Digging into Microbial Ecosystems Deep Underground
National Laboratory. Letters of Intent are due March 16, 2022 to freely access resources at multiple DOE user …
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