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Natural Prodcast Episode 1: The Primer, Part 1
… – problems that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic … Secondary Metabolites Science Program here at JGI. It’s a new group formed under the director who has also got a long … dose to one person. ALISON: Oh no. And I bet that’s not a renewable resource. DAN: …A yew tree takes about 200 years to …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… the tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a protein … Those similarities, based on their ratios of small DNA sequence fragments called tetranucleotides, are a way to …
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Micro-Scale Applications Group
… of cutting-edge approaches.  Our group also seeks out new approaches that utilize microfluidics/microdroplet … The JGI provides users access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated …
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Building Sphagnum Genomic Resources
… (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on carbon … up nearly 3 percent of the earth’s land surface. In the New Phytologist, researchers led by David Weston of Oak … a carbon sink or a carbon source. These research results, building on the availability of genomic information from two …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome … are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) metagenomes …
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Boosting Small Molecule Production in Super “Soup”
… as proteins, and the mechanisms for maintenance to keep processes running smoothly. As reported August 26, 2021, in … have been really powerful at finding ways to accelerate bio-design and identifying the best sets of enzymes that enable … are partnering with Yasuo Yoshikuni and Ian Blaby of the DNA Synthesis Science Program . “This collaboration brings …
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JGI@25: Building a Better Bean
… of the JGI; and Scott Jackson of the University of Georgia sequenced and analyzed the genome of the common bean. That … farmers and a commercial crop for large producers. The team sequenced and assembled a 473-million basepair genome of the … color begins to darken. Called “after-darkening,” this process not only means the beans take longer to cook, but it …
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New and Improved: Eucalyptus Reference is Now Accessible
… for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of … having genomic resources to develop molecular breeding tools has been critical. The new improved genome assembly … Africa. The South African team collected the plant tissues. DNA and RNA sequencing were conducted by the JGI, along with …
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Meeting Code of Conduct
… with this policy. Our aim in hosting an event is to build a stronger community. Our goal is to create an …
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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial … As mobile genetic elements like viruses spread their DNA, they can affect how microbes cycle nutrients and adapt …
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