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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … recognize the need to have a limited and time-sensitive protection of certain types of data to support their use by … proposal. Third parties (often referred to as “data users”) cannot see this data. Use-Restriction : A period in which …
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JGI@25: Strengthening Soybean
… and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … soybean genome sequence and ASR in this JGIota, a Genome Insider podcast minisode.)  In 2016, the JGI accepted a proposal from …
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Novel and Emerging Capabilities that Can Provide a Holistic Understanding of the Plant Root Microbiome
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The More the Merrier: Making the Case for Plant Pan-genomes
Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … ongoing and many plants, including agricultural staples and candidate bioenergy feedstock crops, are recent polyploids. …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 … also the chair of the JGI User Executive Committee, on how that study went from the lab to the classroom. …
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Cataloging the Microbes that Manage the Health of River Systems
Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … that the microbes in these bodies of water help regulate. However, the microbes also interact with compounds like … the microbiology of watershed systems, they utilized over 160 river water samples collected through WHONDRS, a …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias … data supports higher education in this JGIota , a Genome Insider podcast minisode.)  “The ultimate target has shifted from just …
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User Executive Committee Charter
… the JGI user community and is responsible for providing input and advice on JGI policies and practices that … and concerns; Provide feedback and make recommendations on how the JGI Science Programs can best support the user community. Advise the JGI on other …
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Identification and characterization of a skin microbiome on Caenorhabditis elegans suggests environmental microbes confer cuticle protection
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Marine Microbe Contains Multitudes
Summary To study the lifestyles of SAR324, lead author Dominique Boeuf and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long Hawaii Ocean … periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, …
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A Complex Confection Decoded: Sugarcane Reference Genome
… was the last major crop without a reference quality genome and now crop researchers can work toward advancing … for  biofuels and other bioproducts. Finally, understanding how brown rust disease resistance works in sugarcane could … Phytozome .   … The work (proposal: https://doi.org/10.46936/10.25585/60001084 and …
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Institutional User Agreements
… proposal starts with a User Agreement — before any work can begin, including the submission of samples for … will replace the active version. For researchers with a Howard Hughes Medical Institution (HHMI) appointment, a … completion of work on all approved proposals within 36 months from the approved start date. Additional time …
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