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Metabolomics
… strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that influence system behavior.  Through … samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as different types …
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Fungal diversity notes 253–366: taxonomic and phylogenetic contributions to fungal taxa
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Jeremy Schmutz
Mr. Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was working … For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community …
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The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry
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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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Natural Prodcast Episode 23: Aaron Puri
… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … who’s a Co-PI on a JGI project Amy Schaefer . So we’ve been friends ever since. She’s a senior scientist who works with … DAN: Almost like you know that there is. AARON PURI: It’s a planted question Dan. Yeah. So overall I think what we’re …
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Fungus Fuels Tree Growth
Researchers start pinning down how a fungal symbiont spurs growth of poplar, a … organic matter, or as an endophyte, living between a plant’s root cells. The fungus is almost always found among …
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Sequencing the fungal tree of life
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has desirable properties as … … 3 P. pachyrhizi genomes on MycoCosm … Plant Datasets … Fungal Datasets …
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Informatics Advisory Committee
The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. … and strategic objectives for the JGI’s data science, informatics and information technology (IT) activities and strategic plan. …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora … and decide on the order in which this fungus breaks down plant cell wall materials including lignin, cellulose and … This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently published in the  …
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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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