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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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Plant Microbial Interactions Group
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An Integrative Computational Approach for Prioritization of Genomic Variants
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Genomic approaches to accelerate American chestnut restoration
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with names — …
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Computationally Classifying Fungal Lifestyles
… of lifestyle based on 6 gene clusters showed a >95 % accuracy in correctly predicting plant pathogens (blue) vs … supported by the NSF grants  DEB-1354625 and  IOS-1456958 . Sequencing of  Dothideomycetes genomes were conducted as … 1000 Fungal Genomes Project supported by the JGI Community Sequencing Project # 662 . …
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Sorting for secreted molecule production using a biosensor-in-microdroplet approach
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Viromics approaches for the study of viral diversity and ecology in microbiomes
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The Power of One, Amplified
… value to the other commonly used culture-independent sequencing approaches including amplicon and metagenomic sequencing. For example, they showed that the composition of …
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JGI Portals
… access to information regarding genome and metagenome sequencing projects, and their associated metadata, around … all JGI genomic databases and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data …
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JGI Early Career Researchers Featured in mSystems Special Issue
… Program head Emiley Eloe-Fadrosh outline more targeted approaches to reconstruct individual microbes in an … (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … directions integrating computational and experimental approaches with the aim of eventually studying virus-host …
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Evaluation of inducible promoter–riboswitch constructs for heterologous protein expression in the cyanobacterial species Anabaena sp. PCC 7120
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