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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … directly from samples sidesteps these challenges, since it doesn’t require this kind of lab culture. Beginning in the … its existing Integrated Microbial Genomes & Microbiomes database to include a dedicated section for viruses, so …
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Natural Prodcast Episode 8: Eric Schmidt
… metabolite peptides. And there are two ways that nature does this. The more well-known secondary metabolism systems … can use peptides for! That’s what his collaboration with JGI is all about, and we talk about it a bit here. I have … and so on that we can consult in designing pieces of DNA that we can use to test these issues. The second area …
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IMG Webinar Series
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome … as input. Data analysis Q:  What types of analysis support does JGI provide for DNA modification detection? A:  DNA … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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JGI on the 2021 Highly Cited Researchers List
… Congratulations to the 2021 Highly Cited Researchers at the JGI! They are among those recognized by Clarivate Analytics … biology. The information could be useful toward the DOE’s interest in harnessing the crop toward producing … global cities. He and his colleagues used an extensive JGI database to investigate viruses detected in the samples. …
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FICUS-NERSC/KBASE
… ( NERSC ) is to accelerate scientific discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates … expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in …
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Graduate Students Get Thesis Research Opportunity at the JGI
… Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) … SCGSR award is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of … to work with JGI virus researchers and harness the IMG/VR database. “The SCGSR award will further my goal of resolving …
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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … Biotechnology , a team from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … (from environmental metagenome samples) from IMG/VR , a database that is part of the Integrated Microbial Genomes & …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… targeting transforms oil-producing alga into a powerful platform for developing ​​bio-based industrial products.    … this work supports the mission of the Department of Energy (DOE) Biological and Environmental Research (BER) program to … oil production. The organism uses specific chemical tags on DNA  to control which genes are active. Researchers also …
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Overview of the Genomes OnLine Database (GOLD)
… TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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Webinar: SIP technologies at EMSL and JGI
… Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that leverage … technologies available at JGI and EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with … impacted by the pandemic. 3. Q: What instrument / method does the JGI use to pre-screen DNA for enrichment? A:  The …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
…   On November 3, 2021, the JGI and the Workforce Development & Education department of … collaborations through the U.S. Department of Energy (DOE)’s Visiting Faculty Program (VFP) . The VFP is a summer … Systems Biology Knowledgebase (KBase) Ian Blaby for the JGI DNA Synthesis Platform Ben Bowen and Katherine Louie for the …
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