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Gut Fungi: Unexpected Source of Novel Chemicals
Fungi from herbivore poop make surprisingly complex … to help bolster the bioeconomy. Summary A team led by Michelle O’Malley, a chemical engineer at the University … that these expressed genes translated into expected proteins. That work was done in collaboration with the …
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Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize
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Forest Fungi, Seagrass, and a New View of Symbiosis
Auer discuss their work on communities of forest floor fungi. Allison Joy looks into seagrass meadows' carbon … research on the symbiotic relationship between mycorrhizal fungi and plant roots.  …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… proposal call is open year-round, but proposals submitted by July 30 will be included in the next review. “So webinars … described in this webinar only offered through the CSP Functional Genomics call? A(nswer): It’s also possible … capabilities in other calls such as the  annual large-scale CSP call or through the  “Facilities Integrating …
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Institutional User Agreements
… of sequencing data for synthesis. This agreement, required by the DOE for all work performed in its User Facilities, is … execute a 2024 version .  The recent updates were approved by the DOE to address the DNA Synthesis program. When fully … to a new commercial institution requires approval by all parties. … After your proposal is approved, the …
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DNA Synthesis Program
… program supports cutting-edge research in synthetic biology by synthesizing genes, pathways, and whole chromosomes for … … The JGI has developed a suite of build-optimization software tools to streamline the design-build transition in … and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across sequenced …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant fibers. The … plant fibers. But are they both actually doing the job? By analyzing the enzymes present in the complex organic … detailed database on the denizens in the soil. While large protein databases, like UniProt, exist, are not specific …
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Genome-based analysis of virulence determinants of a Serratia marcescens strain from soft tissues following a snake bite
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JGI Portals
… and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across sequenced … sequenced algal genomes and genome annotations generated by the JGI and by others. The web portal allows users to … are provided to display annotation data from many common software tools, and from many users. It is also a place …
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
Santa Barbara discuss the importance of studying anaerobic fungi, as well as a recent discovery that turns scientific …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… of multiple highly cited papers during the last decade” by Clarivate Analytics. This year’s list features 6,849 … instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the October … and Roux also worked together on the development of a new software tool called geNomad that identifies and classifies …
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JGI Announces 2025 New Investigator Portfolio
… including the genomic dynamics of biofuel-producing fungi, the effects of biochar on rhizosphere microbiomes, …
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