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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… of plants have resulted in a paper published October 5, 2020 , in Nature Biotechnology . Kellogg and her colleagues, … are genes out there that affect this phenotype.’”  Results from A “Massive Amount” of Sequencing  Seed dispersal is … accessions, and to confirm phenotypes, which validate traits.”  “The number of lines sequenced is not trivial, and …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… approved through the annual  Community Science Program (CSP) call of the U.S. Department of Energy (DOE) Joint … The work builds upon a pilot project to sequence antimicrobial-producing strains. Established by Handelsman, Tiny … algal viruses.  The approved proposals started October 1, 2020 and the full list is  available here . They are …
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The environment drives microbial trait variability in aquatic habitats
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for sample collection and storage … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …
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Building Sphagnum Genomic Resources
The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number of resources to … can also act as a protective layer insulating permafrost from the warming regional temperatures. For this reason, the … .” Understanding the nature and genetic basis of functional traits in sphagnum growth and decomposition is critical to …
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Nigel Mouncey
… biology. Dr. Mouncey has a long-standing interest in microbial genetics that started with his education and … DOE National Laboratories, the Community Science Program (CSP), and external collaborations. The Director ensures the … Discovery. mBio. 12:e03432-20 Wood-Charlson EM et al. 2020. The National Microbiome Data Collaborative: enabling …
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JGI announces 2024 Functional Genomics awardees
… proposals for state-of-the-art functional genomics research from reseachers who translate genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that …
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Unique genomic traits for cold adaptation in Naganishia vishniacii, a polyextremophile yeast isolated from Antarctica
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Natural Prodcast Episode 19: Bill Fenical
… real legends of natural products, Professor Bill Fenical from Scripps Institution of Oceanography in San Diego. Bill … powerful people. These were people that really controlled microbial drug discovery. And a guy like me, with no … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …
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Scaling Up Existing Skill Sets
… bioinformatics internship opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer 2019 … Merced in Spring 2019.) Mentor: Ben Cole, Genomics of Plant-Microbial Interactions What effect has your summer …
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Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology
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Plant-Microbial Interactions Group
… including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered …
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