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Scientific Advisory Committee
… strategy, operations, and scientific relevance and quality. Responsibilities of this board include providing … sequencing, new sequencing technologies, and related informatics; overview of the scientific programs at the JGI; … Research (BER) program, set the final sequence allocation for this program. …
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of … delay processing, while samples that are of insufficient quality or quantity will preclude approval for processing. … …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth … tools for viral genomics. Notable examples include CheckV , which assesses the quality and completeness of …
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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
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Obtaining Comparative Genomic Data with the VISTA Family of Computational Tools
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Nikos Kyrpides
Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became … S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . 6(7):960-970. Nayfach S, et al. (2021) CheckV assesses the quality and completeness of …
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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Who We Are
… staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and … Systems Biology Knowledgebase and the National Microbiome Data Collective.        … Learn more about our work at the …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group … Metagenome Program, and coordinates the development of the virus and plasmid workflows for the National Microbiome Data …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
For the first time, a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial … of a virus relative to its host (inferred through sequence data) can suggest different predatory behaviors. A high …
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Special Initiatives & Programs
… sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  … in the BER funding call, proposals are NOT eligible for BERSS support through the JGI (with the exception of … and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis …
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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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