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An Automated Tool for Assessing Virus Data Quality
The Science Through advances in sequencing technologies and computational approaches, more and more virus sequences are … being recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … boundary clearly defined using functional annotation methods, it was possible to distinguish between metabolic …
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Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods
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Discovery and annotation of small proteins using genomics, proteomics, and computational approaches
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Novel Approaches Toward Scalable Composable Workflows in Hyper-Heterogeneous Computing Environments
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Natural Prodcast Episode 20: Brian Bachmann
… in and around drug discovery, which includes screening methods, genome mining in cave microbiomes, and using …
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New Lineages of Life Group
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Zhong Wang
… and enabling data-driven science. This is a group of computational biologists, bioinformaticians, computer … intersection between the rapid development of genome and computational technologies, in the coming years the Wang … group will continue its effort to explore new genome and computational technologies (NanoPore, GPU, Cloud etc) and …
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JGI Portals
… … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all … of plasmids automatically identified from genomes, metagenomes, and metatranscriptomes. It provides rich data … of Uncultivated Viral Genomes, derived from genomes, metagenomes, and metatranscriptomes. It features over 15 …
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Examining the Relationship Between the Testate Amoeba Hyalosphenia papilio (Arcellinida, Amoebozoa) and its Associated Intracellular Microalgae Using Molecular and Microscopic Methods
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Natural Prodcast Episode 14: Nigel Mouncey
… we’re doing. And using these together along with all of our computational tools to really build out much more of an … the products coming from these clusters. And then our computational work to link all this together and try to … at JGI. And we have two arms to the group. One is the computational work that Dan and our new hire, Drew Doering …
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VISTA Region Viewer (RViewer)—a computational system for prioritizing genomic intervals for biomedical studies
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Spacer2PAM: A computational framework to guide experimental determination of functional CRISPR-Cas system PAM sequences
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