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Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).
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ProDeGe: a computational protocol for fully automated decontamination of genomes
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Exabiome: Advancing Microbial Science through Exascale Computing
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Mike Sneddon
… Berkeley National Laboratory. Mike earned his PhD in Computational Biology and Bioinformatics from Yale … coarse-graining of biological complexity with NFsim. Nature Methods 8, 177–183 (2011).  … PhD, Computational Biology & Bioinformatics, Yale University MS, Computational Biology & Bioinformatics, Yale University BS, …
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An Automated Tool for Assessing Virus Data Quality
… The Science Through advances in sequencing technologies and computational approaches, more and more virus sequences are … being recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … boundary clearly defined using functional annotation methods, it was possible to distinguish between metabolic …
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JGI Early Career Researchers Featured in mSystems Special Issue
… Roux outlines what’s been achieved thus far based on computational predictions, and future directions integrating computational and experimental approaches with the aim of … has advanced drastically, aided by genome assembly from metagenomes. This is a critical step toward better …
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Obtaining Comparative Genomic Data with the VISTA Family of Computational Tools
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Computational protein design enables a novel one-carbon assimilation pathway
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A survey of computational approaches for characterizing microbial interactions in microbial mats
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Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods
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Discovery and annotation of small proteins using genomics, proteomics, and computational approaches
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Novel Approaches Toward Scalable Composable Workflows in Hyper-Heterogeneous Computing Environments
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