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Natural Prodcast Episode 19: Bill Fenical
… of natural products, Professor Bill Fenical from Scripps Institution of Oceanography in San Diego. Bill is a pioneer … why it’s so hard to succeed, and we talk about an ongoing project I’ve been working with him on as an exploration into … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and …
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The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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The YNP Metagenome Project: Environmental Parameters Responsible for Microbial Distribution in the Yellowstone Geothermal Ecosystem
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … of genomes from uncultivated microbes (Nature 2019). Other projects in the group include the sequencing and comparative …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have … climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … strengths into other plants. A brief timeline of sorghum projects at the JGI: 2009: JGI and collaborators use …
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The Biota Project: A Case Study of a Multimedia, Grassroots Approach to Scientific Communication for Engaging Diverse Audiences.
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental …
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An Integrated Dataset to Understand Ecosystem Interaction
… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … (LANL), and DE-AC05-76RL01830 (PNNL). … BioScales project on JGI Genomes Online Database … BioScales project …
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his postdoctoral … of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis of diverse … 2011; 333: 762-765. Gobler CJ et al. Niche of harmful alga  Aureococcus anophagefferens revealed through ecogenomics.  …
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