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JGI@25: A Single Cell, Myriad Microbial Discoveries
… isolated from the microbes found in the oil plume from Deepwater Horizon oil spill led to a draft genome of the first deep-sea, oil-eating bacterium from a single cell. Several … of the tree of life. Used in tandem over the years, metagenomics and single cell genomics have afforded JGI …
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A Mentor’s Perspective on Training the Next Generation
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Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines
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Energy efficiency and biological interactions define the core microbiome of deep oligotrophic groundwater
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Bioenergy sorghum’s deep roots: A key to sustainable biomass production on annual cropland
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The Power of One, Amplified
… preview of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated … cells harbored mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that … environment. Summary Dewar Creek is a remote hot spring, deep within the British Columbia backcountry (Purcell …
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Microbial Genomics & Metagenomics (MGM) Workshop
… is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: mgm.jgi.doe.gov   This highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) … sequence data and enables the user to analyze these data with existing bioinformatic methods to bridge the gap from …
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Learning representations of microbe–metabolite interactions
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JGI@25: Studying Sorghum’s Survival Skills
… biofuels thanks to its drought and flood hardiness. Even with little water, full sunlight and hot temperatures, … Genome roster. Sorghum has an important feature in common with certain other cereal crops: It performs C4 … aligning it with over 50 other diverse sorghum genomes. Deep sequencing and genetic linkage analysis improve the …
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Open Frameworks Training the Next Generation of Scientists
… for both student and faculty researchers. Aligning with this overarching goal, Myco-Ed is a partnership … microbiome data. Undergraduate educators are partnering with the JGI and KBase to tap into their existing … problem to solve because fungi are very diverse organisms with potential biotechnology applications in a range of …
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Mining Metagenomes for Cas Proteins
… of California (UC), Berkeley, which is also affiliated with the Innovative Genomics Institute. The Impact The … study senior author Jennifer Doudna’s lab, and he worked with co-first author David Burstein, then a postdoctoral … provided from the IMG/M database in enabling new discoveries and is a continuation of previous collaboration …
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, including … to the DOE, and publication requirements. An official with authority is usually an individual in a central office, … Officer/Director or Legal Representative. Please check with your unit director or supervisor for the appropriate …
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