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Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant … difficult. Our Plant Gene Atlas resource addresses that by providing standardized experimental conditions, tissue … internode time course data from 4 different genotypes by Dr. John Mullet; Dr. Tom Juenger and his postdoc Xiaoyu …

… recent study  published in the journal  Nature , a team led by researchers at the U.S. Department of Energy (DOE) Joint … genomes of uncultivated giant viruses from environmental sequences across the globe, then using these sequences to make inferences about the biogeographic …

… for improved growth rate and growth yield on glucose by elimination of gluconate formation. Appl Environ …

The disease is known more commonly as Sudden Oak Death or by its acronym, SOD. Of the dozens of Phytophthora species, … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop … … Publication: Tyler BM et al. Phytophthora genome sequences uncover evolutionary origins and mechanisms of …

The Science Considered the world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar … the sugarcane cultivar R570 has been  published in  Nature by an international consortium. With the genetic code of … Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in …

… the Methodology section as “those that rank in the top 1% by citations for papers published and cited between … Nature Genetics, the work is part of a long-term project to sequence, annotate and analyze the genomes of more than 300 … of the JGI plant portal Phytozome, which is overseen by 2017 Highly Cited Researcher David Goodstein. Go here to …

The battle waged below the Earth’s surface is reconstructed by combining a study of microbial communities (metagenomics) … at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria … resist foreign genetic elements by incorporating short sequences from infecting viruses and phages. In these …

… under laboratory conditions, their genomes can’t be sequenced using traditional approaches. Identifying and … expanding the known diversity of bacteria and archaea by 44%, is now available and  described November 9, 2020 in  … of metagenome-assembled genomes (MAGs) directly from sequenced environmental samples without needing to cultivate …

Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data … through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes …

… synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is … of results. … All proposals undergo technical review by JGI staff as well as staff at the other participating … review, proposals are evaluated and placed in rank order by the reviewers. The ranked proposal list, along with a …

… expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …

… messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our code would …