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SIPs with Standards
Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which … to more researchers. Ultimately, the goal is to generate SIP data that can be useful to multiple teams and …
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Effects of sample treatments on genome recovery via single-cell genomics
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Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome … use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 …
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Robert Bowers
Bob uses single-cell genomics and metagenomics to explore how microbes influence people and the environment. This includes studying …
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You Can Move, But You Can’t Hide
… forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  … in soils and water. MGEs like viruses and plasmids drive microbial processes and evolution. This is because MGEs can … cycles around them. By understanding more about the genomics of MGEs and their evolution at the cellular level, …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have … from environmental samples — to identify over 27,000 microbial genes. These genes were identified based on their … assembly of small DNA fragments into larger and coherent pieces called contigs — into genes and even into genomes — …
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W. Berkeley Kauffman
Berkeley is responsible for receiving and processing user samples. His R&D work focuses on the development of … to improve the JGI’s capabilities in the areas of metagenomics, single-particle genomics, and metabolic …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. Both bacteria …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
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