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Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of approved proposals … collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently burned …

… opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer 2019 interns, … briefly shared their experiences below. Name: Noelle Anderson Class Year: At the time of the internship, 4th year PhD …

… deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in … at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria … resist foreign genetic elements by incorporating short sequences from infecting viruses and phages. In these …

Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes …

… private sector, as well as research expertise in secondary metabolites and synthetic biology. Dr. Mouncey has a long-standing interest in microbial genetics that started with his education and carried forward into his roles as a senior research …

… work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar … Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in …

Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly Cited … includes 10 affiliated with the JGI . The 2019 list focused on Highly Cited Papers, defined in the Methodology section … Nature Genetics, the work is part of a long-term project to sequence, annotate and analyze the genomes of more than 300 …

As SIP experiments shed more light on microbial communities than ever before — especially with … work to create FAIR datasets to maximize returns on these advances. Over the last two decades, Stable Isotope … a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required …

Jan. 7: New Capabilities to Study Secondary Metabolism   Although there are still a large number … expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …

DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with … increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … they were able to identify 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  …

Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and … of fern biology and, more broadly, land plant evolution. Recent findings in Ceratopteris richardii show a long … richardii marks the first published manuscript of a genome sequence generated through the OGG. For a long time, C-fern …

Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … under laboratory conditions, their genomes can’t be sequenced using traditional approaches. Identifying and … of metagenome-assembled genomes (MAGs) directly from sequenced environmental samples without needing to cultivate …