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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections … hundreds of species decompose debris, mobilize nutrients from that decay, and deliver those nutrients to tree roots … give researchers a way to access much more information about fungi in these environments. “Now with these new tools — …
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Complete genome sequence of Haliscomenobacter hydrossis type strain (OT)
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Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth
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FICUS Overview
… The ranked proposal list, along with a recommendation from management at JGI and the other participating …
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A Collaboration to Improve Plant Genome Annotations Across Species
… and involves more than 17 research groups. The team set out to characterize the transcriptome – the complete set of RNA molecules transcribed from all the genes within a cell or tissue at a specific … resource. To demonstrate that, we included datasets from two species, one of which is sweet sorghum Rio from a …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… In each garden, switchgrass plants clonally propagated from cuttings represent a diverse collection sourced from half of the United States. As  reported January 27, … and farmers fully understand that when you move plants outside of their native habitat or cold hardiness zones, …
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A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes
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Extracting the Secrets of Secondary Metabolites
… and other industries — yet there’s still so much about them we don’t know.  Unlocking the power of secondary … CRAGE allows for the transplanting of these BGCs from one organism into an alternate host via a landing pad … to rapidly confirm enhanced production of 22 metabolites from six biosynthetic gene clusters. One of those was a …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… challenges.   Scanning the California oak woodlands from the air, large swaths of the bleached, skeletal remains … and it has served as just that on a catastrophic scale from Baja California north into Oregon and beyond. The … scores of nurseries across the nation, elevating concerns about the pathogen to an all-time high. California homeowners …
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Access to Rock Star Scientists
… “Everyone here is very kind and really open to talking about their work. It’s fun to be around people who are generous with their time and like nerding out about the big stuff, well, the little stuff! People hold …
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FICUS-NERSC/KBASE
… The ranked proposal list, along with a recommendation from management at JGI and the other participating …
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DAP-seq Drives Robust Mapping of Gene Regulation
… applications. “We worked with 10 species ranging from grasses to broccoli and trees like poplar, spanning about 150 million years of evolution,” said Leo Baumgart, … “A lot of these technologies were designed for samples from humans or mice,” said Sharon Greenblum, a co-first …
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